PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G15720.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 366aa MW: 37523.7 Da PI: 5.6331

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G15720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	59.3	7.3e-19	287	318	2	33
--SS-EEEEEEE--TT-SS-EEEEEE-STT-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCp 33 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C OBART04G15720.1 287 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCA 318 8******************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-17	275	318	IPR003657	WRKY domain
PROSITE profile	PS50811	16.891	281	317	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-16	282	318	IPR003657	WRKY domain
SMART	SM00774	7.4E-12	286	336	IPR003657	WRKY domain
Pfam	PF03106	1.3E-14	287	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEEWKDSNHR GADYLMTMPM QNFLADAFPP PELLEGEGGF EKHGLSVAVG SPPPTPPPPE 60 DGCSPLPLTP QFGQKFGSGG GGGGGGSLAD RRARGGFSNV ARISVPYNQP AADVSSAGAP 120 SPYVTIPPGL SPTTLLESPV FFSNAMGQAS PTTGKLHMLG GANDSNPIRF ESPPIEEGSG 180 AFSFKPLNLA SSHYAAAEKT KSLPNNQHQS LPISVKTEAT SIQTAQDEAA ANQLMQPQFN 240 GGKLSRAAPD NGGDGEGQPA EGDAKADSSS GAAAVAVVAA AAAAVAEDGY SWRKYGQKQV 300 KHSEYPRSYY KCTHASCAGG GMEAVVVPKA EVKQEAMPPA AAAAGAGRGA AVYQQAMSRV 360 SLGNQL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEEWKDSNHR GADYLMTMPM QNFLADAFPP PELLEGEGGF EKHGLSVAVG SPPPTPPPPE  60
DGCSPLPLTP QFGQKFGSGG GGGGGGSLAD RRARGGFSNV ARISVPYNQP AADVSSAGAP  120
SPYVTIPPGL SPTTLLESPV FFSNAMGQAS PTTGKLHMLG GANDSNPIRF ESPPIEEGSG  180
AFSFKPLNLA SSHYAAAEKT KSLPNNQHQS LPISVKTEAT SIQTAQDEAA ANQLMQPQFN  240
GGKLSRAAPD NGGDGEGQPA EGDAKADSSS GAAAVAVVAA AAAAVAEDGY SWRKYGQKQV  300
KHSEYPRSYY KCTHASCAGG GMEAVVVPKA EVKQEAMPPA AAAAGAGRGA AVYQQAMSRV  360
SLGNQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341843	0.0	AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
GenBank	AY341851	0.0	AY341851.1 Oryza sativa (japonica cultivar-group) WRKY10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634497.1	0.0	probable WRKY transcription factor 2 isoform X2
Refseq	XP_015634498.1	0.0	WRKY transcription factor SUSIBA2 isoform X1
TrEMBL	A0A0D3FWX7	0.0	A0A0D3FWX7_9ORYZ; Uncharacterized protein
STRING	OBART04G15720.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2075	38	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-22	WRKY DNA-binding protein 2