PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G17940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 248aa    MW: 26691.4 Da    PI: 6.3469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G17940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17173224155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  OBART04G17940.1 173 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDIAAIKFRG 224
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-11173224IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-19173234IPR016177DNA-binding domain
CDDcd000185.22E-25173234No hitNo description
PROSITE profilePS5103219.401174232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-19174233IPR001471AP2/ERF domain
SMARTSM003804.3E-34174238IPR001471AP2/ERF domain
PRINTSPR003675.9E-5175186IPR001471AP2/ERF domain
PRINTSPR003675.9E-5214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA  60
PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG GGRRTVGDGG GIDGQEDMKL  120
ICGIIAVGEK AKVARGDRMS NYEKELEEMK HMTRQEYIAH LRRNSSGFSR GASKYRGVTR  180
HHQHGRWQAR IGRVAGNKDI YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS  240
ILDSSTLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2412720.0AK241272.1 Oryza sativa Japonica Group cDNA, clone: J065132I19, full insert sequence.
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635553.13e-69AP2-like ethylene-responsive transcription factor BBM1
RefseqXP_015691515.12e-69PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A0D3FXN90.0A0A0D3FXN9_9ORYZ; Uncharacterized protein
STRINGOBART04G17940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.17e-59AP2 family protein