PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G21350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 694aa    MW: 75992.1 Da    PI: 4.5801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G21350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13340386354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  OBART04G21350.1 340 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 386
                      5899***********************7.....6***************977 PP
2HLH406.8e-13620666354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + ErrRR+++N+ f  L++llP+      +K++Ka+iL +++ Y+k L
  OBART04G21350.1 620 KSHVMSERRRREKLNEMFLILKSLLPSV-----RKVDKASILAETITYLKVL 666
                      5899***********************7.....6***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.3E-3128161IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.177337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17340401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-14340391No hitNo description
PfamPF000102.5E-10341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16341398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.177617666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-14620671No hitNo description
SuperFamilySSF474596.94E-17620681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10621666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-16621678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14623672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MASAPPVQEE ALQPGTNHFR SRLAAAVKTR KISNLEDLTA DQLVLRRSEQ LSELYYSLLS  60
GECDHRARKP VAALSPEDIA DTEWYYVVCM TYAFRPGQGL PGRSYASNRS VWLCNAQSAD  120
SKTFLRALLA KTIVCIPFMS GVLELGTTDP VSEDPNLVNR IVAYLKELQF PICLEVPSST  180
PSPDETEDAD TVFDGLIEED QMVILQGEDE LGDVVVAECE TNGANPETIT METDEFYSLC  240
EELDLDLGSY QLVPTSARET MAAAAAAAND VDGVAYSHAS CFVSWKRANP AEKVVAVPMT  300
AGIESQKLLK KAVGGGTAWM SNIDGRGSVA ITTTPGSSIK SHVMSERRRR EKLNEMFLIL  360
KSLLPSVRKV DKASILAETI TYLKVLEKRV KELESSSREP SRWRPTEIGQ GKASSPGRRS  420
LRWMSYGVDE VSEDPNLVNR IVAYLKELQF PICLEVPSST PSPDETEDAD TVFDGLIEED  480
QMVILQGEDE LGDVVVAECE TNGANPETIT METDEFYSLC EELDLDLGSY QLVPTSARET  540
MAAAAAAAND VDGVAYSHAS CFVSWKRANP AEKVVAVPMT AGIESQKLLK KAVGGGTAWM  600
SNIDGRGSVA ITTTPGSSIK SHVMSERRRR EKLNEMFLIL KSLLPSVRKV DKASILAETI  660
TYLKVLEKRV KELESSSREP SRWRPTEIGQ GKAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1625630ERRRRE
2626631RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0210800.0AB021080.1 Oryza sativa Plw-OSB2 mRNA for R-type basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635094.11e-171anthocyanin regulatory R-S protein
SwissprotP135261e-101ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLA0A0D3FYT80.0A0A0D3FYT8_9ORYZ; Uncharacterized protein
STRINGOBART04G21350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-45bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]