PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G27520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 100aa    MW: 11488.9 Da    PI: 11.0234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G27520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.7e-093157232
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfs 32
                     +y+GVr +k +g+WvAeIr+p +   r+r++
  OBART04G27520.1 31 QYRGVRMRK-WGKWVAEIREPHK---RTRIW 57
                     6******99.**********732...36655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-123059IPR001471AP2/ERF domain
PfamPF008471.2E-43157IPR001471AP2/ERF domain
SMARTSM003809.5E-53197IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-83160IPR016177DNA-binding domain
PROSITE profilePS5103211.9833166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MAPLAAAAAA VAAKEEQAAV LPLQQQQPRR QYRGVRMRKW GKWVAEIREP HKRTRIWRGV  60
PHGEEQHHHH EQKHQRTAWS GRAKNPDLNQ APSPENSDAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610953e-74AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence.
GenBankAK0993333e-74AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence.
GenBankAL6066353e-74AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAP0149603e-74AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3G0Y74e-65A0A0D3G0Y7_9ORYZ; Uncharacterized protein
STRINGOBART04G27520.17e-66(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.12e-12related to AP2 10