PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G27540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 463aa    MW: 48985.6 Da    PI: 9.9338
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G27540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31e-14205255155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  OBART04G27540.1 205 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 255
                      89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.75689171IPR001471AP2/ERF domain
SMARTSM003801.5E-5128177IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-6141172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-8142171IPR001471AP2/ERF domain
CDDcd000182.33E-24205265No hitNo description
SuperFamilySSF541711.96E-18205265IPR016177DNA-binding domain
PfamPF008471.0E-10205255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-17206263IPR001471AP2/ERF domain
PROSITE profilePS5103216.489206263IPR001471AP2/ERF domain
SMARTSM003803.0E-33206269IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSAATLAGEA EARSGGGGRR ARARQPAEAR RGCGGPLAVG MVVVGAFSRR RPYCAALAHA  60
APRWGMVARA RRPPRPLRAS GARQERAAGW RGDTVAAGQA QAGDATPNPT RAAVAQLAVP  120
QRHVLPPHRA MGIAHMGLWQ AGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYEDDLK  180
QQSDHEEEFV HVLRRQSTGF PRGNSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE  240
EAARAYDRAA IKCNGKDAVT NFDPSIYAGE FEPPAAATGD AAEHNLDLSL GSSAGSKRGN  300
VDGGGDDEIT GGGGGGAGSD QRVPMAFDLD WQTAAARSTK AKFDQNSNHP QMPPVLQVTH  360
LPFSPRHHHQ FLSNGDPGTA GGLSLTIGAG MAGHWPPQQQ QGWGNAGGMS WPLPPHPPPP  420
PTNAAAAATA TAAAASSRFP PYIATQASTW LQKNGFHSLT RPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0D3G0Y90.0A0A0D3G0Y9_9ORYZ; Uncharacterized protein
STRINGOBART04G27540.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-64AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]