PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G27840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 278aa    MW: 30274.2 Da    PI: 6.8468
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G27840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-172576155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OBART04G27840.1 25 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 76
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-112576IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-182585IPR016177DNA-binding domain
CDDcd000182.83E-252585No hitNo description
SMARTSM003803.0E-322690IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-182684IPR001471AP2/ERF domain
PROSITE profilePS5103219.1372684IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE  60
EEAAEAYDIA AIKFRGLNAV TNFEIGRYNV ESIISSNLPI GSMAGNRSTK AGLELAPSSS  120
ADAIAATEAN HTGVAPPSTL AFTALPMKYD QADYLSYLAL QHHQQGNLQG LGFGLYSSGV  180
NLDFANANGN GTMSNCYTNV SLHEQQQHQH QHQHQHQQEQ QQDQQDDQSQ SSNNSCGSIP  240
FATPIAFSGS YESSMTAAGT FGYYPNVAAF QTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.11e-177AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ36e-62AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D3G1240.0A0A0D3G124_9ORYZ; Uncharacterized protein
TrEMBLI1PQD90.0I1PQD9_ORYGL; Uncharacterized protein
STRINGORGLA04G0240800.10.0(Oryza glaberrima)
STRINGOBART04G27840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-58AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]