PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G30620.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 433aa    MW: 47424.6 Da    PI: 8.6246
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G30620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06249271223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r+++L+ H++  H
  OBART04G30620.1 249 SCPDCGEIFVRPDSLHLHQSIrH 271
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280248271IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871248276IPR007087Zinc finger, C2H2
SuperFamilySSF563991.47E-6273432No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVEPGRARET KVTASASSSA GSDAAVMKKK KKKKKKKLVV ASRKVDEKDK KQVDYKCSRS  60
SGRDECCKVE SRHQQCTEPE SPSYRLALRS LFSCRNSSSS SHAGHHHHRA ADGKKLGCNS  120
ASICKVKQDN PMQQHMRRAE DELKVKDKPP VAEPYCKRRA SVSACNISSE RSVKKSVKQQ  180
QQEASSSLQS SASISASSCS STAGGGGSFR GMQQLSLRRL SGCYECHMVV DPISGVFRDS  240
SSMRATICSC PDCGEIFVRP DSLHLHQSIR HAVSELGAED TSRNIISIIF QSSWLKKQSP  300
VCAIDRILKV HNAARTLARF DDYRAAVKAK AMAHRHPRCT ADGNELLRFH CATLSCDLGL  360
HGATHLCDHL SCAACAIIRP GREEAAAAEE EEEEEEEYDS VAGTTPGLYS NLDELDVFNS  420
TAILPCFVVV YRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12736KKKKKKKKKK
22836KKKKKKKKK
33036KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0998560.0AK099856.1 Oryza sativa Japonica Group cDNA clone:J013110K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634280.10.0uncharacterized protein LOC4337494
TrEMBLA0A0D3G2210.0A0A0D3G221_9ORYZ; Uncharacterized protein
STRINGOBART04G30620.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-62C2H2-like zinc finger protein