PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G01510.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 471aa    MW: 53093.8 Da    PI: 8.7954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G01510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-0680102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cg sF+ + +L++H+++H
  OBART05G01510.1  80 HDCKVCGASFKKPAHLRQHMQSH 102
                      56*******************99 PP
2zf-C2H219.33e-06199223123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  OBART05G01510.1 199 FSCHvdGCPFSYSRKDHLNRHLLTH 223
                      89*********************99 PP
3zf-C2H210.90.0014228253123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  OBART05G01510.1 228 FACPmeGCNRKFTIKGNIQRHVQEmH 253
                      78*******************98877 PP
4zf-C2H220.41.4e-06265289123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  OBART05G01510.1 265 FICPeeNCGKTFKYASKLQKHEESH 289
                      78*******************9988 PP
5zf-C2H216.62.3e-05356380223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  OBART05G01510.1 356 RCHlkDCKLSFSKKSNLDKHVKAvH 380
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-676111No hitNo description
SMARTSM003550.001680102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.54980107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-680111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-9196225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.56E-6196225No hitNo description
SMARTSM003550.0016199223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349199228IPR007087Zinc finger, C2H2
PROSITE patternPS000280201223IPR007087Zinc finger, C2H2
SuperFamilySSF576671.29E-6226254No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6226254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0019228253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866228258IPR007087Zinc finger, C2H2
PROSITE patternPS000280230253IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-7261289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-5262291No hitNo description
SMARTSM003550.0018265289IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24265289IPR007087Zinc finger, C2H2
PROSITE patternPS000280267289IPR007087Zinc finger, C2H2
SMARTSM003557.8297322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280299322IPR007087Zinc finger, C2H2
SMARTSM0035513325346IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.34E-7336397No hitNo description
PROSITE profilePS5015711.967355385IPR007087Zinc finger, C2H2
SMARTSM003550.031355380IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5356381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280357380IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-6382408IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.5386412IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974386417IPR007087Zinc finger, C2H2
PROSITE patternPS000280388412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETRKEMDH DCKVCGASFK KPAHLRQHMQ SHSLERTPKC EKALSGLVPG  120
WGDPSGKLLQ ECLFHALLQV FSSVAKNYLL YATAVIVTIG SQRTPKCVKA LNGLVSGWGD  180
SPEKLHQECL VHTLFQRPFS CHVDGCPFSY SRKDHLNRHL LTHQGKLFAC PMEGCNRKFT  240
IKGNIQRHVQ EMHKDGSPCE SKKEFICPEE NCGKTFKYAS KLQKHEESHV KLDYSEVICC  300
EPGCMKAFTN LECLKAHNKS CHRHVVCDVC GTKQLKKNFK RHQRMHEGSC VTERVRCHLK  360
DCKLSFSKKS NLDKHVKAVH EQKRPFVCGF SGCGKSFSYK HVRDNHEKSS AHVYVQANFE  420
EIDRERPRQA GGRKRKAIPV ESLMRKRVAA PDDDAPACDD GTEYLRWLLS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-1319631940157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-1319631940157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
RefseqXP_015637661.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ41e-88TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D3G2N40.0A0A0D3G2N4_9ORYZ; Uncharacterized protein
STRINGOBART05G01510.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.13e-90transcription factor IIIA