PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G01640.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 87aa MW: 9158.62 Da PI: 9.1023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G01640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69	1e-21	36	84	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+a OBART05G01640.1 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQAS 84 7*********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.115	35	87	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-21	36	83	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFTTAHR VFGASNIIKL LQASSYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-19	35	82	10	57	LOB family transfactor Ramosa2.1
5ly0_B	9e-19	35	82	10	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	1e-133	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638880.1	6e-39	LOB domain-containing protein 1
Swissprot	Q9SK08	7e-28	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A0D3G2Q0	8e-55	A0A0D3G2Q0_9ORYZ; Uncharacterized protein
STRING	OBART05G01640.1	1e-55	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-30	LOB domain-containing protein 1