PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G02070.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 151aa MW: 16216.2 Da PI: 9.7973

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G02070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.3	7.8e-14	27	86	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+aeN + ++ + e +k++ e+ OBART05G02070.1 27 ERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARVEAQIGAYAGELSKVDGEN 86 46789999*********************************9999999998888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-17	24	88	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-11	26	81	No hit	No description
PROSITE profile	PS50217	11.3	26	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-10	28	80	No hit	No description
Pfam	PF00170	8.6E-10	28	82	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	31	46	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MSSPSRRSSS PESNTSGGGG GGYAADERKR KRMLSNRESA RRSRARKQQR LEELIAEAAR 60 LQAENARVEA QIGAYAGELS KVDGENAVLR ARHGELAGRL QALGGVLEIL QVAGAPVDIP 120 EIPDDPLLRP WQPPFAAQPI VATAMADAFQ F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	47	RRSRARKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833673	0.0	CT833673.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102G21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639544.1	3e-80	ocs element-binding factor 1
Swissprot	P24068	2e-35	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	A0A0D3G2U1	1e-102	A0A0D3G2U1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZTR8	1e-102	A0A0D9ZTR8_9ORYZ; Uncharacterized protein
TrEMBL	I1PS55	1e-102	I1PS55_ORYGL; Uncharacterized protein
STRING	OGLUM05G02130.1	1e-103	(Oryza glumipatula)
STRING	ORGLA05G0020300.1	1e-103	(Oryza glaberrima)
STRING	OBART05G02070.1	1e-103	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-24	basic region/leucine zipper motif 53

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]