PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G02110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 179aa    MW: 19861.2 Da    PI: 7.0156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G02110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.4e-293997259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  OBART05G02110.1 39 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 97
                     69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-323198IPR003657WRKY domain
SuperFamilySSF1182908.76E-253397IPR003657WRKY domain
SMARTSM007744.2E-333898IPR003657WRKY domain
PfamPF031064.0E-244097IPR003657WRKY domain
PROSITE profilePS5081128.1054099IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTKMSSMKAD GSVPKRRRQD VQKVVVSLKD HKVEQGPPAD SWSWRKYGQK PIKGSPHPRG  60
YYKCSSYRGC PARKQVDKCR NDASLLIITY TSDHNHDNYA ATTTNSVQEQ AHNPDTSDPL  120
SNGMSLAEVV TVASSKLSGE EESCDFFDEL EELPVSASPL PSLSFMVQEC SFSDARTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1740971672WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364660.0CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-133probable WRKY transcription factor 69
TrEMBLA0A0D3G2U51e-131A0A0D3G2U5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PH201e-131A0A0E0PH20_ORYRU; Uncharacterized protein
TrEMBLB9FMA01e-131B9FMA0_ORYSJ; Uncharacterized protein
TrEMBLQ688Q41e-131Q688Q4_ORYSJ; Putative WRKY transcription factor
STRINGORUFI05G02200.21e-132(Oryza rufipogon)
STRINGOBART05G02110.11e-132(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-34WRKY DNA-binding protein 65