PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G03900.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 156aa    MW: 16977.9 Da    PI: 9.0678
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G03900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51e-193165135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ Cg+t+Tp+WR gp g+++LCnaCG++yrkk++
  OBART05G03900.1 31 CVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRR 65
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.732561IPR000679Zinc finger, GATA-type
SMARTSM004017.9E-162575IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-142868No hitNo description
Gene3DG3DSA:3.30.50.103.0E-152966IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.29E-123166No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003201.8E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGSSDQKVIG IAAAAAAAAA AEEEEAGRRC CVECGATTTP MWRGGPTGPR SLCNACGIRY  60
RKKRRQELGL DKKQQQEHHP HHHQQQQQQY QRQQQQQQQE DHSDAASSVK DSSSSSSNKS  120
SSLQVVKKRR VLMGVEEAAI LLMALSSSSS PTLLHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377510.0CT837751.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655008.12e-60PREDICTED: GATA transcription factor 23-like
RefseqXP_015692844.12e-60PREDICTED: GATA transcription factor 23-like
TrEMBLA0A0D3G3F11e-109A0A0D3G3F1_9ORYZ; Uncharacterized protein
STRINGOBART05G03900.11e-110(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-19GATA transcription factor 23