PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G04360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 246aa    MW: 26930.8 Da    PI: 8.6467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G04360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.4e-142569147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW+ eE+e+++da  ++G + Wk+I + +  ++t+ q++s+ qk+
  OBART05G04360.1 25 RERWSGEEHERFLDALILFGRD-WKRIEAFVA-TKTAIQIRSHAQKH 69
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-151975IPR009057Homeodomain-like
PROSITE profilePS5129416.2032074IPR017930Myb domain
TIGRFAMsTIGR015573.3E-152472IPR006447Myb domain, plants
SMARTSM007178.7E-102472IPR001005SANT/Myb domain
PfamPF002495.0E-102569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-72569IPR009057Homeodomain-like
CDDcd001673.84E-82770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAAMAAAAAG TKKKTRKPYT ITRPRERWSG EEHERFLDAL ILFGRDWKRI EAFVATKTAI  60
QIRSHAQKHF LKARKFGLAG GLPPPLHPRR ATLLRANAAA ADMMPPPWLP SASGGSIGCS  120
APPSGVQQSM AGWSPACYST DEASFRPLIH SNDNDCSFIE TPSCIGSGGE SWIGDDAFFM  180
QDETIRLPIS PDDLGFAQVY KFVGDMFGSG ERRPVEAHLR RLQGMDPAIS ETILLMLKNL  240
EANLFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241441e-141AC124144.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099P06, complete sequence.
GenBankAP0149611e-141AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-141CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-171protein REVEILLE 8
TrEMBLA0A0D3G3K80.0A0A0D3G3K8_9ORYZ; Uncharacterized protein
STRINGOBART05G04360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-32MYB_related family protein