PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G06380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 38602 Da    PI: 9.9263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G06380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11165209554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  OBART05G06380.1 165 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 209
                      7789*********************9.....9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16158229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-10162214No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14164227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEHDHQYAT PPSPSSSSFR SFSAGTTTTT TSRDDNSSLM LAAAAASCHH QTTEVSSQIL  60
LPRPGQAARR SSGGHGAAAA ATAFRPYSRY LGPKKHLLRR PGAATTATGG GGGQRAFKKA  120
ISVLSKIHAA RLAQYYQIME MAARASPAAT AGGGGGENQQ LQLQHVLSER KRREKLNDSF  180
KALRDVLPPA TKKDKASVLM RAKDYVNVLK ARIAELEEKN RKLSESQQLH AGDGDGERDD  240
GPDDDKIEVN TSRSAADQGS SPNKCQELHL KIVLGSSSGC SAMDAVAGIL QGLNEKRDVS  300
LLATGHNSSS SSSSGRRRLL PRAKSSQQPA SSSCDEEILK ESVVKDDSPA AVKDVMQSET  360
VRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
2169174RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.10.0transcription factor PIF1
TrEMBLA0A0D3G4910.0A0A0D3G491_9ORYZ; Uncharacterized protein
STRINGOBART05G06380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-17bHLH family protein