PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G11630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 171aa    MW: 18876.5 Da    PI: 6.7956
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G11630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.14.1e-1550961157
                     HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      le+L++ + ++ yp+++ r+eL+ klgLt++q ++WF+ rR k++k
  OBART05G11630.1 50 SLEVLKRTYTEDLYPNETIRAELSVKLGLTDKQLQMWFCHRRLKDRK 96
                     589******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-639101IPR001356Homeobox domain
SuperFamilySSF466894.06E-124896IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-135096IPR009057Homeodomain-like
PfamPF000469.8E-135096IPR001356Homeobox domain
PROSITE profilePS5007113.1515097IPR001356Homeobox domain
CDDcd000866.63E-105197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDLGAASAVA VSSSGGRRAT GEIGQRQVES AGERLWIQRE GEAHHEDALS LEVLKRTYTE  60
DLYPNETIRA ELSVKLGLTD KQLQMWFCHR RLKDRKPPPK RQQLEEEVHV PVMAPPPVLP  120
PPLPHSELTM APGGMYGEQL LPSSSRRGTG RPSAILDMSD LQCLPLLTSH G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.15e-43homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_015639401.15e-43homeobox-DDT domain protein RLT2 isoform X2
TrEMBLA0A0D3G6181e-120A0A0D3G618_9ORYZ; Uncharacterized protein
STRINGOBART05G11630.21e-121(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2352544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.22e-14Homeodomain-like transcriptional regulator