PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G11710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 293aa    MW: 30621 Da    PI: 4.692
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G11710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.6e-2384145159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++    C+++++v+r+++dp    +tY geH+++
  OBART05G11710.1  84 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqLCTAQRQVQRCDDDPASYRVTYIGEHTCR 145
                      58***************************98878*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-2576147IPR003657WRKY domain
PROSITE profilePS5081120.6179147IPR003657WRKY domain
SuperFamilySSF1182902.22E-2382147IPR003657WRKY domain
SMARTSM007741.4E-3484146IPR003657WRKY domain
PfamPF031064.6E-2285145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSPAPAPAYA QVMEDMEKGK ELAAQLQGLL RDSPEAGRFV GQILHTFSRA MRALDKAAVS  60
AAGGEGSEVQ SEQSSGNTVV VKNLDDGQAW RKYGQKEIQN SKHPKAYFRC THKYDQLCTA  120
QRQVQRCDDD PASYRVTYIG EHTCRDPATA PIIAAHVIHQ VAAGDDDDGC GGLHAGSRLI  180
SFVAAPAAPV DAAAAPTTST ITTVTAPGPL LQPLKVEGGV GSSDQEEVLS SLTPGSSAAR  240
GGGGGGGVAG PFGPDQGDVT SSLHWSYDAV AGMEFFKNDE VVFDLDDIMG LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-4877145169OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0662550.0AK066255.1 Oryza sativa Japonica Group cDNA clone:J013058O04, full insert sequence.
GenBankAK1039590.0AK103959.1 Oryza sativa Japonica Group cDNA clone:001-015-C02, full insert sequence.
GenBankAY8706110.0AY870611.1 Oryza sativa (japonica cultivar-group) WRKY45 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637594.11e-176probable WRKY transcription factor 70
TrEMBLA0A0D3G6260.0A0A0D3G626_9ORYZ; Uncharacterized protein
STRINGOBART05G11710.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-24WRKY DNA-binding protein 46