PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G11960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 110aa    MW: 11621.2 Da    PI: 8.7545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G11960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.61e-091179170
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70
                     l pG++ +P+d+elv + L ++++g++l+l  vi ++d +++ P++L +  +++ +e +f +k+ + +++
  OBART05G11960.1 11 LLPGLKLDPSDDELVGRCLLRRLQGQSLPLGGVILDADSLSSPPRNLLAD-HGRGDEPFFLAKKGNGKRQ 79
                     579***************************999**************743.3445577777766554332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-11493IPR003441NAC domain
PROSITE profilePS5100512.77311110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQSLPL GGVILDADSL SSPPRNLLAD  60
HGRGDEPFFL AKKGNGKRQR SSVEGQRMCV DGGRLRGSFG SYPKDYPSNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343461e-135AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAC1377481e-135AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence.
GenBankAP0149611e-135AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.13e-33NAC transcription factor 32
TrEMBLA0A0D3G6523e-71A0A0D3G652_9ORYZ; Uncharacterized protein
STRINGOBART05G11960.14e-72(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137