PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G14450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 207aa    MW: 21239.1 Da    PI: 6.0854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G14450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS59.76.3e-1917122193274
             GRAS 193 eLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                      +L v pg  laV   lq+hrll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+
  OBART05G14450.1  17 RLVVIPGQPLAVVANLQIHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALN 110
                      678889999*********************************99764455555589************************************** PP

             GRAS 263 yysalfdsleak 274
                      yy+alfd+lea+
  OBART05G14450.1 111 YYAALFDALEAS 122
                      *********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.2E-1617122IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGIEELSATA TGSIGSRLVV IPGQPLAVVA NLQIHRLLAF PDYVDGVASR RPAAEQSGSS  60
QHTMTTATKT KADALLRAIR DLNPKLVVLT ENEADHNVAE LGARVWNALN YYAALFDALE  120
ASSTPPAAVP PPGAAHGGGC FPVICWCDVP VFSVSTWTAR RVLVPAPPLW PPAAAGGAGP  180
SGSGYGGDGP STASSSAAMW ANLFLGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.11e-72scarecrow-like protein 3
TrEMBLA0A0D3G6Z61e-146A0A0D3G6Z6_9ORYZ; Uncharacterized protein
STRINGOBART05G14450.11e-147(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-08GRAS family protein