PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G14470.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 252aa    MW: 25273.4 Da    PI: 6.341
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G14470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS59.38.1e-1965171192274
             GRAS 192 eeLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                      ++L v pg  laV   lq+hrll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al
  OBART05G14470.1  65 SRLVVIPGQPLAVVANLQIHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNAL 158
                      5688899999*********************************99764455555589************************************* PP

             GRAS 262 eyysalfdsleak 274
                      +yy+alfd+lea+
  OBART05G14470.1 159 NYYAALFDALEAS 171
                      **********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.8E-1665171IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVPVPVASMA TATAPAAVAA ADNGGHGSSS ASQNASGSGQ GQGGNVVGRM SIEELSATAT  60
GSIGSRLVVI PGQPLAVVAN LQIHRLLAFP DYVDGVASRR PAAEQSGSSQ HTMTTATKTK  120
ADALLRAIRD LNPKLVVLTE NEADHNVAEL GARVWNALNY YAALFDALEA SSTPPAAVPP  180
PGAAHGGGCF PVICWCDVPV FSVSTWTARR VLVPAPPLWP PAAAGGAGPS GSGYGGDGPS  240
TASSSAAMWW VG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.13e-73scarecrow-like protein 3
TrEMBLA0A0D3G6Z81e-178A0A0D3G6Z8_9ORYZ; Uncharacterized protein
STRINGOBART05G14470.11e-179(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-08GRAS family protein