PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G14860.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SRS

Protein Properties

Length: 152aa MW: 15692.1 Da PI: 6.505

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G14860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	95.3	1.2e-29	6	91	79	154
DUF702 79 kskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s++++++s+t++s+a+++++++tss lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++ OBART05G14860.1 6 GSQTTTTTSRTSTSNATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 91 567889999999*********99999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.2E-25	13	90	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	3.3E-26	42	88	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPRLLGSQTT TTTSRTSTSN ATTPRSFDTS SSHQVASFRD ALPRHVRAPA VFRCVRVTSV 60 DDGDDEFAYQ AAVTINGHMF RGFLYDQGAD DGRGGMASTS NDESSHGAGA AVPSISDLHL 120 GSASAAVPPH LYSGGSGGPL ILGGLGYGNT MN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104710	0.0	AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBank	AC136219	0.0	AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881073.1	1e-104	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-29	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0D3G743	1e-105	A0A0D3G743_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0PLV6	1e-103	A0A0E0PLV6_ORYRU; Uncharacterized protein
TrEMBL	C7J319	1e-103	C7J319_ORYSJ; Os05g0386201 protein
TrEMBL	I1PV75	1e-103	I1PV75_ORYGL; Uncharacterized protein
STRING	ORUFI05G15960.1	1e-103	(Oryza rufipogon)
STRING	ORGLA05G0127300.1	1e-103	(Oryza glaberrima)
STRING	OBART05G14860.1	1e-106	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-27	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]