PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G16150.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 774aa    MW: 85660.6 Da    PI: 7.4112
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G16150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.55.1e-35103177276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  OBART05G16150.1 103 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 177
                      ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-2797164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.487100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-33101180IPR004333Transcription factor, SBP-box
PfamPF031106.1E-27103177IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MPPVSSSTSR PASLPSSPHR EGSKRRVRKR DPRLVCPNYL AGRVPCACPE IDEMAAALEV  60
EDVATELLAG ARKKPKGAGR GSGAAVGGSG GGASRGTPAE MKCQVPGCEA DIRELKGYHR  120
RHRVCLRCAH AAAVMLDGVQ KRYCQQCGKF HILLDFDEDK RSCRRKLERH NKRRRRKPDS  180
KGILEKDIDD QLDFSADGSG DGELREENID VTTSETLETV LSNKVLDRET PVGSDDVLSS  240
PTCAQPSLQI DQSKSLVTFA ASVEACLGTK QENTKLTNSP VHDTKSTYSS SCPTGRVSFK  300
LYDWNPAEFP RRLRHQIFEW LSSMPVELEG YIRPGCTILT VFVAMPQHMW DKLSEDTGNL  360
VKSLVNAPNS LLLGKGAFFI HVNNMIFEVL KDGATLTSTR LEVQSPRIHY VHPSWFEAGK  420
PIDLILCGSS LDQPKFRSLV SFDGLYLKHD CRRILSHETF DCIGSGEHIH DSQHEIFRIN  480
ITTSKLDTHG PAFVEVENMF GLSNFVPILV GSKHLCSELE QIHDALCGSS DISSDPCELR  540
GLRQTAMLGF LIDIGWLIRK PSIDEFQNLL SLANIQRWIC MMKFLIQNDF INVLEIIVNS  600
LDNIIGSELL SNLEKGRLEN HVTEFLGYVS EARNIVDNRP KYDKQRQVDT RWAGDYAPNQ  660
PKLGISVPLA ESTGTSGEHD LHSTNAASGE EENMPLVTKA LPHRQCCHPE TSARWLNAAS  720
IGAFPGGAMR MRLATTVVIG AVVCFAACVV LFHPHRVGVL AAPVKRYLSR NYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-37102182585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159177KRSCRRKLERHNKRRRRKP
2163175RRKLERHNKRRRR
3170177NKRRRRKP
4171176KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A0D3G7J20.0A0A0D3G7J2_9ORYZ; Uncharacterized protein
STRINGOBART05G16150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-144squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]