PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G18200.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 160aa    MW: 17603 Da    PI: 4.8504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G18200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.21.9e-07123106128
              NAM 106 LvfykgrapkgektdWvmheyrl 128
                      +vfy+grap g kt+W m+eyr+
  OBART05G18200.1   1 MVFYRGRAPAGAKTKWKMNEYRA 23 
                      89*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.833156IPR003441NAC domain
SuperFamilySSF1019412.75E-8155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVFYRGRAPA GAKTKWKMNE YRAFEEDDDN AAAAAPAQNH YLQTRSDFSL CRLYTRSGCP  60
RQFDRRPPSS SVAGGGGENR AAPSSTAAAF ANEDAAESSG KSQKRKRSAP DDRLDSTSSS  120
DDNGGCDGSM LQQQQQRQRG TDEELVECSM TDWADLLDWF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0637030.0AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBankJN1854420.0JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638341.11e-111NAC domain-containing protein 90
TrEMBLA0A0D3G8781e-114A0A0D3G878_9ORYZ; Uncharacterized protein
STRINGOBART05G18200.11e-114(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-16NAC domain containing protein 61