PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G18270.3

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 515aa MW: 57178.3 Da PI: 6.5597

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G18270.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	8.1e-12	200	247	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 k err+++NReAAr+sR+RKka++++Le+ + +++e+e ++ +++ OBART05G18270.3 200 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 247 699*************************97222444555544444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	197	264	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	199	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-9	200	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-7	201	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-8	201	247	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-29	287	361	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MNHCEGSSWR MANDHDRAVP HSQAVAYGIQ GHAVLAAPPA NFLELQPAAA AYFGELEKAL 60 IHGTSAGAGV DHGMIQSDAY TESAGYLAAR PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD 120 SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA 180 GGLDMRKHGS TRKDGKLLDA KTERRLAQNR EAARKSRLRK KAYVQQLETS RIRLQQIEQE 240 LQRARSQVPT LRKPHKIATS NNTILTKGAV MFDMEYTRWI DDDSKCMAEL QGALQAQLPD 300 GNLGAIVEEC MRHYDELFHL RAVLASSDVF HLMTGMWAAP AERCFLWMAG FRPSEILKML 360 IPQLDPLTEQ QLMGMCSLQQ SSEQTEEALA QGLHQLHQSL ADAVGGGPLN DGADVANYTG 420 LMALALGRLE NLESFYRQAD NLRQETLHHM RRILTTRQTA RCFLSIGEYN RRLRALSSLW 480 ASRPRENFIA TENVSPTGTE FQVIQQSQQN QFSGF

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MNHCEGSSWR MANDHDRAVP HSQAVAYGIQ GHAVLAAPPA NFLELQPAAA AYFGELEKAL  60
IHGTSAGAGV DHGMIQSDAY TESAGYLAAR PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD  120
SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA  180
GGLDMRKHGS TRKDGKLLDA KTERRLAQNR EAARKSRLRK KAYVQQLETS RIRLQQIEQE  240
LQRARSQVPT LRKPHKIATS NNTILTKGAV MFDMEYTRWI DDDSKCMAEL QGALQAQLPD  300
GNLGAIVEEC MRHYDELFHL RAVLASSDVF HLMTGMWAAP AERCFLWMAG FRPSEILKML  360
IPQLDPLTEQ QLMGMCSLQQ SSEQTEEALA QGLHQLHQSL ADAVGGGPLN DGADVANYTG  420
LMALALGRLE NLESFYRQAD NLRQETLHHM RRILTTRQTA RCFLSIGEYN RRLRALSSLW  480
ASRPRENFIA TENVSPTGTE FQVIQQSQQN QFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639063.2	0.0	transcription factor TGAL5 isoform X7
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D3G887	0.0	A0A0D3G887_9ORYZ; Uncharacterized protein
STRING	ONIVA05G19180.5	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-127	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]