PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G18940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 382aa    MW: 41994.2 Da    PI: 8.6728
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.19.6e-111601971954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  OBART05G18940.1 160 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 197
                      554459******************************98 PP
2BELL92.63.9e-302796372
             BELL  3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                     +e q +k++L+sl+e V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  OBART05G18940.1 27 AEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 96
                     58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-10194IPR006563POX domain
PfamPF075262.4E-271892IPR006563POX domain
PROSITE profilePS5007112.455138201IPR001356Homeobox domain
CDDcd000865.02E-14141202No hitNo description
SMARTSM003891.4E-11141205IPR001356Homeobox domain
SuperFamilySSF466892.35E-17143208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29144205IPR009057Homeodomain-like
PfamPF059203.0E-19158197IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDAAGSVDHE MDGSDRAVAD AVTVSGAEQQ WRKTRLISLM EDVCKRYRQY YQQLQAVVSS  60
FETVAGLSNA APFASMALRT MSKHFKYLKG IILNQLRNTG KGATKDGLGK EDTANFGLMG  120
GGAGLLRGNN VNSFSQPHNI WRPQRGLPER AVSVLRAWLF EHFLHPYPTD SDKQMLAKQT  180
GLTRNQVSNW FINARVRLWK PMVEEIHNLE MRQLQKNPSL DKNQLSMQHT QHSSDSSGKP  240
CDPSNSLQGQ SSSMTRNHSI SASRHIEDGL SQMPHDISGQ VSFAYNGLAA HHSIAMAHHH  300
QPDLIGTGGA ANAGGVSLTL GLHQNNNRAY IAEPLPAALP LNLAHRFGLE DVSDAYVMSS  360
FGGQDRHFTK EIGGHLLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17147204158Homeobox protein Meis1
4xrs_B2e-17147204158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0D3G8H00.0A0A0D3G8H0_9ORYZ; Uncharacterized protein
STRINGOBART05G18940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-65TALE family protein