PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G19310.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 174aa    MW: 18004.1 Da    PI: 8.3722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G19310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000833352120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++C+ C+k+F++   L  H 
  OBART05G19310.1 33 FRCKTCSKTFTSFQALGGHR 52
                     89*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-93255IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-63255No hitNo description
SMARTSM003550.413355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1183360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-685112No hitNo description
PROSITE profilePS5015710.53390117IPR007087Zinc finger, C2H2
SMARTSM00355590112IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-1090114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASGQRAVGE GSGGLRPTTH VAGGGGSARG EYFRCKTCSK TFTSFQALGG HRTGHTRMAA  60
RQRQEHGAAG AAVVGATNNQ RRVVSAHQWH LCAVCGVEFR MGQALGGHMR RHRGEAAAAT  120
PPAAAAAASA GAVSSVEPPE MLDLNSPPAV EEAGEGDQEV ERAEQEPRLL NLLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172650.0AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638878.11e-100zinc finger protein ZAT7
TrEMBLA0A0D3G8M31e-121A0A0D3G8M3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A0B31e-121A0A0E0A0B3_9ORYZ; Uncharacterized protein
TrEMBLI1PWC71e-121I1PWC7_ORYGL; Uncharacterized protein
STRINGOGLUM05G20400.11e-121(Oryza glumipatula)
STRINGORGLA05G0167500.11e-121(Oryza glaberrima)
STRINGOBART05G19310.11e-121(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1905489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-22C2H2 family protein