PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G20330.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 289aa    MW: 31004.7 Da    PI: 4.9603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G20330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.93.7e-22119185159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STT..EEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpk..vveitYegeHnhe 59 
                      +dD++ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s++   d+   v +itY geH+++
  OBART05G20330.1 119 MDDKFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCTATKQVQQSETaddDTAspVYVITYFGEHTCR 185
                      58***************************99999*******9986421133233789*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.029114164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-23115185IPR003657WRKY domain
SuperFamilySSF1182907.06E-22116186IPR003657WRKY domain
SMARTSM007742.5E-32119186IPR003657WRKY domain
PfamPF031061.9E-23120185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALTMLSLAA IAGKPTTASA QLVAEGRESA ARLYALLVGS SALHGPLDLA EQILLCFDRA  60
LAKLHGVDVA GAENDDAAGS GNVRKRKPGR GSAAAASSKR MRVSNGGGNG ARIERKATMD  120
DKFLWRKYGQ KEIKNSKYPR FYYRCSYKDD HGCTATKQVQ QSETADDDTA SPVYVITYFG  180
EHTCRHASVS WPCSGDDAQN NSETSHESSP PEAPAGEEEH LRPCTAAADV PDEPIMESTP  240
PAPELLADLK LMDGCLLDGE SLFGMDELVY FHELSAALGL LDRDWGAPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20119185869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447371e-138AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149611e-138AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-138CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.11e-178probable WRKY transcription factor 38
TrEMBLA0A0D3G8Z70.0A0A0D3G8Z7_9ORYZ; Uncharacterized protein
STRINGOBART05G20330.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-21WRKY DNA-binding protein 70