PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G20340.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 196aa    MW: 21401.5 Da    PI: 3.9762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G20340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.44e-25262258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58
                     +D y WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+ +dp+++++tY geH +
  OBART05G20340.1  2 HDSYLWRKYGQKEIKNSKHPRLYYRCSYRddhGCTATKQVQQSEdDDPSLFVVTYFGEHFC 62
                     7***************************99999********9872579***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.1E-37164IPR003657WRKY domain
PROSITE profilePS5081119.623160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-24263IPR003657WRKY domain
SuperFamilySSF1182904.97E-23263IPR003657WRKY domain
PfamPF031061.1E-25362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MHDSYLWRKY GQKEIKNSKH PRLYYRCSYR DDHGCTATKQ VQQSEDDDPS LFVVTYFGEH  60
FCGRVADVGG PVVAGDDGEE SEELIVISFG SSAAVAAATG GASAAYPWPC CREDAKNSGA  120
SQPWSLPDCE EVPPLTANVA EELIEESTPE SELMGLISSP DLEYSLLDLE LGESSLGIDG  180
FINFDELSVY SIDNAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19162868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447376e-65AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149616e-65AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126176e-65CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.11e-44probable WRKY transcription factor 38
TrEMBLA0A0D3G8Z81e-142A0A0D3G8Z8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DT301e-142A0A0E0DT30_9ORYZ; Uncharacterized protein
STRINGOBART05G20340.11e-143(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46