PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G21230.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 330aa MW: 37230.1 Da PI: 8.6612

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G21230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	47	88	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L+ OBART05G21230.1 47 KTLRRLAQNREAARKSRLRKKAYVQQLEDSRMKLTQLEQELQ 88 6789************************99888888776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.9E-7	43	112	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	45	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.65E-7	47	90	No hit	No description
Pfam	PF00170	9.5E-8	47	88	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	48	92	No hit	No description
PROSITE pattern	PS00036	0	50	65	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	129	204	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MVYASPGTDA STDPDIDKNI RMFEQGDPPT PIAYCPREKS KGKLGQKTLR RLAQNREAAR 60 KSRLRKKAYV QQLEDSRMKL TQLEQELQRA RQQGIIISTS GDQQRSTSEN EALAFNMEYM 120 RWLEEHNKQI NELRSAVHTH AGDDDLQSIV SSVMAHHEEI FRIKGLAAKA DVLHVLSATW 180 RTPLERCFLW LGGFRPSDLL KLLADQLEPL TEQQLASIYN QQQSSQQAEE TLSQGMEIIQ 240 DSLAKTVASQ LGRAGSSSPS NAADHTAAAL GKIGDMESLL QQADDLRMQS LQKMQRVLTT 300 RQFARALLLV SDYFSRLRAL NSLWIARPQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC129718	1e-146	AC129718.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0088I06, complete sequence.
GenBank	AP014961	1e-146	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881449.1	0.0	transcription factor TGAL1-like isoform X1
Swissprot	Q41558	1e-155	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A0D3G9A3	0.0	A0A0D3G9A3_9ORYZ; Uncharacterized protein
STRING	OBART05G21230.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16946	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-125	bZIP family protein