PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G23030.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 337aa    MW: 34074.2 Da    PI: 7.7067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G23030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.57.7e-18206240135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  OBART05G23030.1 206 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 240
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-18200250IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479200236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-15201237IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-15202263No hitNo description
CDDcd002025.88E-14205252No hitNo description
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15206240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEVAAADYAG GVRVKKEAGG CGGGGDMFLV DDLLDLPCDE EEEETGLCGA YGGGGAGLGA  60
GVVGGGGDDR AAGNASADSS TVTAVDSCSN SFSGLADGDF SGGLCEPLPA GGAGALPTEA  120
PVPGKARSKR SRVAPCSWSS RLMVLPPPPA SPPSPASAVI SPSESGTAAP AFPAKKAAKS  180
AKKKDGPSPA PAPNAAAQAA AEGRRCLHCE TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL  240
VPEYRPAASP TFVVSKHSNS HRKVVELRRQ KEMQLLHHHQ QPPPHVGAGG GGAAGGLLHV  300
TSPLLFDGPT SSAPLFAGAD EFLIHNRISP DYRRQAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306110.0AC130611.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0483D07, complete sequence.
GenBankAC1324910.0AC132491.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0599F04, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8376640.0CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638019.11e-167GATA transcription factor 12
TrEMBLA0A0D3G9V80.0A0A0D3G9V8_9ORYZ; Uncharacterized protein
STRINGOBART05G23030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-46GATA transcription factor 12