PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G25610.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 320aa    MW: 35117.7 Da    PI: 10.561
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G25610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1314100186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         st+++f +l+
  OBART05G25610.1  14 CWSEGETEALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARVMP------STWSFFPELD 100
                      7******************************************99999999********************999886......5899999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2612102No hitNo description
Gene3DG3DSA:1.10.10.602.5E-41284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPPPNPNLPY REDCWSEGET EALVRAWGSR YVELNRGNLR QKQWQEVADA VNSRRGAAAR  60
RRPPRTDVQC KNRVDTLKKK YKAERARVMP STWSFFPELD RLVGPTLSAS ASKRPSPSPS  120
PVPPPPHFAM PIHPSAVRKP PSPSPSPSPP PPMALPLPSY RRGSPLPAAA LIQQEAAAAA  180
AAAVSDSEDS EGPGDNNNHN AQRSPSQSVS SRSGNSNKRS RQEVDGGFRE LARAIEAFAE  240
MYERVESAKQ KQALEIERQR IDFLKQLEVK RMENFVDAHV KLARAKRIKK HAGTAPDGIG  300
AAELVSSVAA LPFLSTSTYI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1133330.0AC113333.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1115_B06, complete sequence.
GenBankAK0678620.0AK067862.1 Oryza sativa Japonica Group cDNA clone:J013124K11, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.10.0trihelix transcription factor ASIL2
TrEMBLI1PXW40.0I1PXW4_ORYGL; Uncharacterized protein
STRINGORGLA05G0221200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-31sequence-specific DNA binding transcription factors