PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G25980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 417aa    MW: 43799.6 Da    PI: 6.6777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G25980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33201258259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  OBART05G25980.1 201 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 258
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-35185260IPR003657WRKY domain
SuperFamilySSF1182903.53E-29192260IPR003657WRKY domain
PROSITE profilePS5081131.95195260IPR003657WRKY domain
SMARTSM007743.2E-39200259IPR003657WRKY domain
PfamPF031063.1E-26201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSGGGGGGEG FPFHDELASL FAERPPNGAM PGMLQQQQPW SFIDYHHHLM QESAPTTPPL  60
DYEAFAGEFD DDVAPLEEVK RELVVDGVGL FPGGGASAAA AAAAVAGPMT PNSMSVSSTS  120
SEACGVGGGA GGDEESAGKC KKEEEGDGGD DDGKEGSATT KGDGDGEDKN KKGVKGKGKG  180
EKRPRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTTQK CPVKKRVERS  240
YQDAAVVITT YEGKHTHPIP ATLRGTAHLL GAAAAAHHHG GLQYHHPGHF AAAVGHRLPP  300
QPHDTLGGGL LAPPHAQHLH AMQHQMQLAA AASGGSVHAA AMQQMPQPDH AGLAAIIAST  360
TGASTTPAPP PATGSAAAAT TPLRMQHFMA QDYGLLQDMF IPSPFLHNDD ANNNNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26191261878Probable WRKY transcription factor 4
2lex_A4e-26191261878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637917.10.0WRKY transcription factor 23
TrEMBLA0A0D3GAW20.0A0A0D3GAW2_9ORYZ; Uncharacterized protein
TrEMBLI1PXZ90.0I1PXZ9_ORYGL; Uncharacterized protein
STRINGORGLA05G0224700.10.0(Oryza glaberrima)
STRINGOBART05G25980.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-43WRKY DNA-binding protein 71