PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G26790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 253aa    MW: 28405.3 Da    PI: 9.9139
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G26790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.8e-08821082854
                      HHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRak 54 
                      +e++eLA++l+L  +qV  WF NrR +
  OBART05G26790.1  82 KEKKELADRLNLRISQVDAWFRNRRLR 108
                      7899*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000869.28E-574108No hitNo description
SuperFamilySSF466892.97E-675108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-781117IPR009057Homeodomain-like
PfamPF000461.1E-582108IPR001356Homeobox domain
PROSITE profilePS500719.92882112IPR001356Homeobox domain
SMARTSM003401.3E-8167210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGCNNNN TRELGIHLDL DRPYAREELP  60
QQGGSMETSH LRSRKLMEHF QKEKKELADR LNLRISQVDA WFRNRRLRGC EPNDSSKKAL  120
TSFHKQQYRS VSSVEQVQSS SSAPVTVMLL LAIPFRLIFT NLQSKQKSTE MECAYLKECF  180
NKLKEENHRL QLQVEQLRST SLQLQLQLQL HSERVATAPT GQQAGTSAAA RIFTLPLSGY  240
NPSRGTWFSP NAH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985711e-151AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAP0149611e-151AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638698.12e-93homeobox-leucine zipper protein HOX3
TrEMBLA0A0D3GB610.0A0A0D3GB61_9ORYZ; Uncharacterized protein
STRINGOBART05G26790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1906588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-08homeobox-leucine zipper protein 18