PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G27320.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 253aa    MW: 27434.6 Da    PI: 5.4082
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G27320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.31.1e-2698156259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers e p v++itY  eH h 
  OBART05G27320.1  98 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 156
                      699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.36992158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2693158IPR003657WRKY domain
SuperFamilySSF1182909.02E-2495158IPR003657WRKY domain
SMARTSM007742.4E-3197157IPR003657WRKY domain
PfamPF031068.6E-2299155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEYSNDWDLQ ALVRSCGTAV ADSEPEPPAA PSTSRERGEG GEHEVLISFP AIASTSGQGR  60
KQPGRKPGVR TARPKRSKKS HLKKVVCEVP VADGGVSTDL WAWRKYGQKP IKGSPYPRGY  120
YKCSSLKACM ARKMVERSPE KPGVLVITYI AEHCHAVPTQ LNSLAGTTRN NKPASPDQQQ  180
QQQPSPGGAS TDEAAAAAAK TEDSADTTCS MADDENDLWA PVEMDMDDFF GPFDDDLDHF  240
LDDDAVLGRR LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-1879159280Disease resistance protein RRS1
5w3x_D4e-1879159280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638808.11e-143WRKY transcription factor 22-like
TrEMBLA0A0D3GBC10.0A0A0D3GBC1_9ORYZ; Uncharacterized protein
STRINGOBART05G27320.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-36WRKY family protein