PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G27620.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 194aa MW: 21815.2 Da PI: 7.6128

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G27620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	30.7	6.1e-10	6	44	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++Y +Cf ++ +Cs++C+C++C N + OBART05G27620.1 6 ERPKCSCVQSSCTQLYWRCFRSRYFCSDNCNCSGCYNIK 44 5679********************************965 PP
2	TCR	46	1e-14	105	143	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ kgC+C+kskC k+YCeCf++ + C+ +CkC++C+N+ OBART05G27620.1 105 KHAKGCSCRKSKCSKLYCECFKNSVGCTAKCKCQECRNS 143 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-4	5	46	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	29.728	6	145	IPR005172	CRC domain
Pfam	PF03638	1.4E-7	9	42	IPR005172	CRC domain
SMART	SM01114	2.3E-12	105	146	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-11	108	143	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MANNQERPKC SCVQSSCTQL YWRCFRSRYF CSDNCNCSGC YNIKYYEDAI EEISDMIQMK 60 NPNAFDPRII VSVQDATAAD PQSSTSAISD PKNTSDAMPG NEQRKHAKGC SCRKSKCSKL 120 YCECFKNSVG CTAKCKCQEC RNSFGVKNSE SSNKPDPDDK SATDGLTREE TTTENITLPG 180 ETWNSDPNKR PRYF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC098598	1e-128	AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence.
GenBank	AP014961	1e-128	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-128	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640260.1	1e-137	protein tesmin/TSO1-like CXC 2 isoform X2
TrEMBL	A0A0D3GBG0	1e-141	A0A0D3GBG0_9ORYZ; Uncharacterized protein
STRING	OBART05G27620.1	1e-142	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12267	23	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	1e-20	Tesmin/TSO1-like CXC domain-containing protein