 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART05G28290.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 198aa MW: 21607 Da PI: 6.5199 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART05G28290.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.7 | 2e-05 | 173 | 195 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+k+F++ + L++H + H
OBART05G28290.2 173 SCKSCSKTFNSEMALQSHSKAkH 195
7*****************98777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MEFWGLEVKP GQTVKCEPED ERFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD 60
KFPQIQFDLV FDKEFELSHT SKTANEEEEE KIIPAPRANG KVEGKENEQK KQGKTDSSAS 120
KSKAAVNDDD DDDDSDKKGV HVATPHPAKQ ASKTPVNDKS KEKSPKSGGG SISCKSCSKT 180
FNSEMALQSH SKAKHPAK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF255711 | 1e-139 | AF255711.1 Oryza sativa putative histone deacetylase HD2 mRNA, complete cds. |
| GenBank | AK063535 | 1e-139 | AK063535.1 Oryza sativa Japonica Group cDNA clone:001-117-B10, full insert sequence. |
| GenBank | AK072845 | 1e-139 | AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence. |
