PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G00790.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 259aa MW: 28455.1 Da PI: 11.0461

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G00790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.9	2.6e-29	178	228	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ OBART06G00790.1 178 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQN 228 9*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.73E-14	175	230	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-26	176	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-21	178	231	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-7	179	229	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MELFPRQLDL SLHISTPSCF SPSPASASTT ASSWPWTTKQ QLPEEEEAAA TTSTTTSSRS 60 APPLLLCNSD VFSTRGSSTT NTNHHADGGL VNSQQLKAEA RQPIHGIPVY HGHQQQQRRQ 120 LHHPYDVVGT RQRDGGRRLF SHHVGVGVTP SRTLSSSSSS PARLLPRLPP GRRSVRAPRM 180 RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQNTK LSVDLETSML 240 RLPGRLNLEF TLGIGKASQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	179	230	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	179	230	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	179	230	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	179	230	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	179	230	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656560.1	6e-43	PREDICTED: probable transcription factor KAN2
TrEMBL	A0A0D3GC00	0.0	A0A0D3GC00_9ORYZ; Uncharacterized protein
STRING	OBART06G00790.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17435	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-29	G2-like family protein