PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G02540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 205aa    MW: 22309.7 Da    PI: 10.1848
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G02540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-194596556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      +++k+q  +Lee+F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OBART06G02540.1 45 LRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 96
                     5789**********************************************98 PP
2HD-ZIP_I/II1253.5e-4044132392
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      k+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk
  OBART06G02540.1  44 KLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 132
                      99***********************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-183299IPR009057Homeodomain-like
PROSITE profilePS5007116.3093898IPR001356Homeobox domain
SMARTSM003892.4E-1540102IPR001356Homeobox domain
PfamPF000466.5E-174596IPR001356Homeobox domain
CDDcd000864.27E-144699No hitNo description
Gene3DG3DSA:1.10.10.601.0E-184796IPR009057Homeodomain-like
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
SMARTSM003401.3E-1998141IPR003106Leucine zipper, homeobox-associated
PfamPF021833.6E-1198132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDKLRLSKD QAAVLEECFK  60
THHTLTPKQK VALAKSLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRW CDQLADDNRR  120
LHKELAELRA LKATPTPPAA APPLTTLTMC LSCKRVANAG VPSPAAAMFP GHPQFLCGFR  180
DHAGAASSSY GGASSGLAKG VRAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308960.0CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642539.11e-101homeobox-leucine zipper protein HOX28
SwissprotA2Y9311e-102HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-102HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A0D3GCK91e-148A0A0D3GCK9_9ORYZ; Uncharacterized protein
STRINGOBART06G02540.11e-149(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-45homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]