PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G03090.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 502aa MW: 53332.6 Da PI: 7.2243

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G03090.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	251	310	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ OBART06G03090.2 251 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 310 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.4E-32	236	310	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-27	244	311	IPR003657	WRKY domain
PROSITE profile	PS50811	28.311	246	312	IPR003657	WRKY domain
SMART	SM00774	3.4E-37	251	311	IPR003657	WRKY domain
Pfam	PF03106	2.2E-27	252	310	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG DKISDGNFFK SLQNISSTKE 60 EGQDDKLEST RAEMGEVREE NERLKTLLSR ISHDYRSLQT HFYDVLQQGR AKKLPDSPAT 120 DIEEPEFVSL RLGTSRSKCK KEDKSTTSSE VKGSTEDFLK IKGGLSLGLS DCRVDANNSE 180 KVQPDVMTLS PEGSFEDARD DTAETTEQWP PSKMLKNLRS VGAEAEDDIA PQPQVKKARV 240 SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA AGCPVRKQVQ RCADDMSILI 300 TTYEGTHNHP LSVSATAMAS TTSAAASMLI SGSSSTSLAA YPAAAASPAL AFDASSKPPL 360 IGGRPINGSR QQGGGGGGGS APPLYQMQQK AAAAAPPPPS VITDTIAKAI TADPSFHTAL 420 AAAITSYVGK KGSPPASGGE DSKVELKWGE HLGLGLTHSS PSTAAAAAAS SSSQMFLQPS 480 LGLSGSTTSA STSPVANREQ AH

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG DKISDGNFFK SLQNISSTKE  60
EGQDDKLEST RAEMGEVREE NERLKTLLSR ISHDYRSLQT HFYDVLQQGR AKKLPDSPAT  120
DIEEPEFVSL RLGTSRSKCK KEDKSTTSSE VKGSTEDFLK IKGGLSLGLS DCRVDANNSE  180
KVQPDVMTLS PEGSFEDARD DTAETTEQWP PSKMLKNLRS VGAEAEDDIA PQPQVKKARV  240
SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA AGCPVRKQVQ RCADDMSILI  300
TTYEGTHNHP LSVSATAMAS TTSAAASMLI SGSSSTSLAA YPAAAASPAL AFDASSKPPL  360
IGGRPINGSR QQGGGGGGGS APPLYQMQQK AAAAAPPPPS VITDTIAKAI TADPSFHTAL  420
AAAITSYVGK KGSPPASGGE DSKVELKWGE HLGLGLTHSS PSTAAAAAAS SSSQMFLQPS  480
LGLSGSTTSA STSPVANREQ AH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-20	251	311	17	76	Probable WRKY transcription factor 4
2lex_A	4e-20	251	311	17	76	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643469.1	0.0	probable WRKY transcription factor 72 isoform X2
Swissprot	A0A3Q7GFB5	2e-88	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A0D3GCT1	0.0	A0A0D3GCT1_9ORYZ; Uncharacterized protein
STRING	OBART06G03090.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	5e-67	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]