PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04170.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 464aa    MW: 52122.3 Da    PI: 6.421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17163209148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  OBART06G04170.1 163 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILP-GRVGKQCRERWHNHL 209
                      799*****************************.*************97 PP
2Myb_DNA-binding51.62.2e-16215257145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  OBART06G04170.1 215 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 257
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.59158213IPR017930Myb domain
SuperFamilySSF466891.04E-31160256IPR009057Homeodomain-like
SMARTSM007171.6E-15162211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-27164216IPR009057Homeodomain-like
CDDcd001674.99E-15166209No hitNo description
PfamPF139214.8E-20166225No hitNo description
PROSITE profilePS5129421.249214264IPR017930Myb domain
SMARTSM007171.3E-15214262IPR001005SANT/Myb domain
CDDcd001673.72E-12217260No hitNo description
Gene3DG3DSA:1.10.10.605.6E-22217262IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGRAGGGVET SRRAAGWEIF CGVEFAPRDA GGGCDVMPFD SYVQHNGHQE IHLVDHPFNN  60
VTDGHEYYSP SAGGSFLPFA TYYDLGHEYY HQGGEKDAVV VDRASPTIRK ASPHLPLFTP  120
KSEVSHLIGG GVVGSYKAFE MNSRLIRRKR ASGKSLKKAN VVKGQWTLEE DRKLVKLVEQ  180
FGLRKWSHIA QILPGRVGKQ CRERWHNHLR PNIKKDTWSE EEDIVLIQTH KEVGNKWAEI  240
AKHLPGRTEN SIKNHWNATK RRQFARRRSR ASSKNPKSGT LLQNYIKSLG IGPIKSSVRQ  300
APSESTVVSS SSPASTQKLS EVNGKIWPDS NPSNQMDTQG ILTMDENTYI QTNSCEELLV  360
SIYDDLCLDM CDHLFETKDE APYQVYNIDD DVDMNYIFNH IEYANKIGNE IDMEMAWDDD  420
VLQDDESAGS SPLETPAGLA QINTVHVKEE MDLIEMVTRT QSCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-431612642105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-431612642105C-Myb DNA-Binding Domain
1msf_C9e-431612642105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418120.0AK241812.1 Oryza sativa Japonica Group cDNA, clone: J065210K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641269.10.0transcription factor MYB119 isoform X1
TrEMBLA0A0D3GD580.0A0A0D3GD58_9ORYZ; Uncharacterized protein
STRINGOBART06G04170.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-64myb domain protein 98