PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04170.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 423aa    MW: 47886.6 Da    PI: 6.5121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-17122168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  OBART06G04170.2 122 KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILP-GRVGKQCRERWHNHL 168
                      799*****************************.*************97 PP
2Myb_DNA-binding51.71.9e-16174216145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  OBART06G04170.2 174 KDTWSEEEDIVLIQTHKEVGNK-WAEIAKHLP-GRTENSIKNHWN 216
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.59117172IPR017930Myb domain
SuperFamilySSF466898.99E-32119215IPR009057Homeodomain-like
SMARTSM007171.6E-15121170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-27123175IPR009057Homeodomain-like
PfamPF139214.2E-20125184No hitNo description
CDDcd001676.78E-15125168No hitNo description
SMARTSM007171.3E-15173221IPR001005SANT/Myb domain
PROSITE profilePS5129421.249173223IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-22176221IPR009057Homeodomain-like
CDDcd001675.20E-12176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPEHNGHQEI HLVDHPFNNV TDGHEYYSPS AGGSFLPFAT YYDLGHEYYH QGGEKDAVVV  60
DRASPTIRKA SPHLPLFTPK SEVSHLIGGG VVGSYKAFEM NSRLIRRKRA SGKSLKKANV  120
VKGQWTLEED RKLVKLVEQF GLRKWSHIAQ ILPGRVGKQC RERWHNHLRP NIKKDTWSEE  180
EDIVLIQTHK EVGNKWAEIA KHLPGRTENS IKNHWNATKR RQFARRRSRA SSKNPKSGTL  240
LQNYIKSLGI GPIKSSVRQA PSESTVVSSS SPASTQKLSE VNGKIWPDSN PSNQMDTQGI  300
LTMDENTYIQ TNSCEELLVS IYDDLCLDMC DHLFETKDEA PYQVYNIDDD VDMNYIFNHI  360
EYANKIGNEI DMEMAWDDDV LQDDESAGSS PLETPAGLAQ INTVHVKEEM DLIEMVTRTQ  420
SCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-431202232105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-4212022356159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-4212022356159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-431202232105C-Myb DNA-Binding Domain
1msf_C3e-431202232105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418120.0AK241812.1 Oryza sativa Japonica Group cDNA, clone: J065210K15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641269.10.0transcription factor MYB119 isoform X1
TrEMBLA0A0D3GD590.0A0A0D3GD59_9ORYZ; Uncharacterized protein
STRINGOBART06G04170.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-64myb domain protein 98