PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04460.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 171aa    MW: 18341.5 Da    PI: 11.1922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-174493255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  OBART06G04460.1 44 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 93
                     69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-3143102IPR001471AP2/ERF domain
PROSITE profilePS5103222.97244101IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2244103IPR016177DNA-binding domain
PfamPF008471.2E-104493IPR001471AP2/ERF domain
SMARTSM003802.8E-3744107IPR001471AP2/ERF domain
PRINTSPR003674.4E-124556IPR001471AP2/ERF domain
CDDcd000186.44E-2250103No hitNo description
PRINTSPR003674.4E-1283103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDRREATVFL PPPPPPPTQP QPPQAAAAAV RATVGGRGGG GGRQYRGVRM RKWGKWVAEI  60
REPNKRSRIW LGSYSTAVAA ARAYDTAVFY LRGRSARLNF PDQLDGAGGG GGSGGGAEDH  120
RELTAAAIRK KAAEVGARVD AQHSVPPPPQ RRRTKNPDLN REPTPDTSDD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1635109480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641200.11e-65ethylene-responsive transcription factor RAP2-9
SwissprotQ8W3M34e-42RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A0D3GD881e-117A0A0D3GD88_9ORYZ; Uncharacterized protein
STRINGOBART06G04460.11e-118(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.11e-30related to AP2 1
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]