PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04680.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 232aa    MW: 24664.2 Da    PI: 11.287
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY33.51.4e-1010462257
            YABBY 22 lavsvPstslfkvvtvrCGhCts.llsvnlakasqll 57
                     l vsvPs+slfk+vt rCGhC+s +l+vn++     +
  OBART06G04680.1 10 LQVSVPSSSLFKTVTARCGHCSSqFLTVNIRGLLLPT 46
                     89*******************8537999988766444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-9548IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MACVCWVCGL QVSVPSSSLF KTVTARCGHC SSQFLTVNIR GLLLPTSAAA GGRALPHSLN  60
LAPPANPPHH HSLLDEILTA SSPTQLLLEQ HGLGGLMASA ASCRNNNVCR NNKKTIAFLR  120
WALRPLPSSA PGTSASAPGS PRSWSPSSPV SPRASAHATT SSLVRMAVIN FLCVPTRSSD  180
PSAKRGQRKG EKRGKREMTT WHPTMWDPRG SHADSAVTWD KTGVNTRVTG FI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-136CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GDB21e-166A0A0D3GDB2_9ORYZ; Uncharacterized protein
STRINGOBART06G04680.11e-167(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1893434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.27e-10YABBY family protein