PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G04890.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 1152aa    MW: 126354 Da    PI: 4.4697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G04890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11382427247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  OBART06G04890.1 382 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 427
                      56*****************************9*************9 PP
2Myb_DNA-binding34.35.5e-11936981247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTteE+ +++++ + +G g Wk+I+  +   +t+ q+ s+ qky
  OBART06G04890.1 936 RFWTTEEHRQFLRGLRVYGRGEWKSISMNFVRSKTPVQVSSHAQKY 981
                      56*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7912981IPR017884SANT domain
SMARTSM007172.8E-53080IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-93480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-53473IPR009057Homeodomain-like
CDDcd001677.07E-63478No hitNo description
PROSITE profilePS5129413.601376432IPR017930Myb domain
SuperFamilySSF466891.36E-14378433IPR009057Homeodomain-like
SMARTSM007171.4E-9380430IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-13381430IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-8381429IPR009057Homeodomain-like
PfamPF002491.1E-7384427IPR001005SANT/Myb domain
CDDcd001671.16E-7384428No hitNo description
PROSITE profilePS5129413.601930986IPR017930Myb domain
SuperFamilySSF466891.36E-14932987IPR009057Homeodomain-like
SMARTSM007171.4E-9934984IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-13935984IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-8935983IPR009057Homeodomain-like
CDDcd001671.16E-7938982No hitNo description
PfamPF002491.1E-7938981IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1152 aa     Download sequence    Send to blast
MVFGGAPMEE GAVAVNGGDG EVVNQDDADD DVLWTDYEHR LFLTGMRVYG RGDWRNISRY  60
FVRRKTPEQI SMYADNYFHM MEIAAAMEAD GGDDDDGHHE INNNNNNNLG GGQLHAVVGA  120
VGHGPGAGHI APATPSNNNA AAAAVNNNVD TPFWVPLLYN PEIERWMMEM QAQSQKAWDD  180
QQMKMAEAAT PKEEGAADKH GVDGGGDGRG EATNAYDSSA LVAGAGNGDT RHDRIVRELQ  240
AWFPWRTMDQ LIGLYIELMA EEPAAAQPQY FDAGAVVDPT FDFFNDHNNF LGMPPPPVQQ  300
ADDHAMNNVV ADAGMNYFYG GAGGGAMVFG GGAPMGETVE QAAPPVPAPV AVAPVVMNRD  360
DDEVNNQGGG RHRAAPTNTT RRFWTTEEHR QFLRGLRVYG RGEWKSISMN FVRSKTPVQV  420
SSHAQKYFRR VESAAADKQR YSINDVGLND DDDDDSAMDG TNIYSNNKFN NNFGGWQSLA  480
FAGGHLEPVS GGAAPRQVIA PASSSAAAMN SAAQFWAPML FNPQIQQQFM QMQAQTQQAW  540
NDQHMMMAAA PMEGATDTNF EPAGAANYYY QQQQQEEEGV IEGWTASEIE EARSLITSPN  600
NGGEGGDGEG NKQKHCGHIV MELHEWFPWK TIGQVIGLYM KLNAGKPMVM HSLNKSDANN  660
SIGEVDHVSA LANGNPVRLE EHRPMLNNVG LVFDYPLEEM EMENQTDKEP KMVVEEEVQP  720
KEGLVIKEKE AGVSKIHTNS QHVTPSIKRR WTAAEMDEAR SIVARLTNAY DSGTLVAGAG  780
NGDTRHDRIV RELQAWLPWR TMDQLIGLYI ELMAEEPAAA QPQYFDAGAV VDPTFDFFND  840
HNNFLGMPPP PVQQADDHNM NNVVADASMN YYYGGGGAGG AMVFGGAPMG ETVEQAAPPA  900
PAPVPVVPVV MNRDDDEVNN QGGGRHRAAP TNTTRRFWTT EEHRQFLRGL RVYGRGEWKS  960
ISMNFVRSKT PVQVSSHAQK YFRRVESAAA DKQRYSINDV GLNDDDDDDS AMDGTNIYSN  1020
NKFNNNFGGW QSLAFAGGHL EPVSGGAAPR QVIAPASSSA AAMNSAAQFW APMLFNPQIQ  1080
QQFMQMQAQT QQAWNDQHMM MAAAPMEGXT DTNFEPAGAA NYYYQQQQQE EEGGAYGVPA  1140
DQWMMNQNNN MF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0028540.0AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3GDD70.0A0A0D3GDD7_9ORYZ; Uncharacterized protein
STRINGOBART06G04890.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1419033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-20MYB family protein