PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G05260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 239aa    MW: 26362.7 Da    PI: 8.0661
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G05260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10190237347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W + E+e l ++v+q+G+g+Wk I    +    gR + ++k++w++ 
  OBART06G05260.1 190 KWCALEEETLRKGVEQYGNGNWKDILTNNPdvfIGRKAMDLKDKWRNM 237
                      68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.122183239IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-12183239IPR009057Homeodomain-like
SuperFamilySSF466892.11E-13185238IPR009057Homeodomain-like
CDDcd116601.86E-16189239No hitNo description
PfamPF002496.0E-8190237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAAERIVGDG AIETWRAADE VTRAKYRLLA GEQRAREIEG KLGETIPQGN QISTPEVHKV  60
MDALKSSCAN LHSVVEDPLP AAKAAADEVL AARMDKAVDL NAGEVSNQPT ACDIAGPSAP  120
ADNLDAPRKG TAASLMDWNP TARTFQWEDS PDPDGSRSPI HRPQLPSPRR TTFSPLQPAD  180
NKAKRRKARK WCALEEETLR KGVEQYGNGN WKDILTNNPD VFIGRKAMDL KDKWRNMMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641699.11e-176uncharacterized protein LOC4340310
TrEMBLA0A0D3GDH91e-175A0A0D3GDH9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PU991e-175A0A0E0PU99_ORYRU; Uncharacterized protein
TrEMBLQ6T8041e-174Q6T804_ORYSJ; ANTHER INDEHISCENCE1
STRINGORUFI06G05310.11e-176(Oryza rufipogon)
STRINGOBART06G05260.11e-176(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-12TRF-like 5