PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G07100.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 188aa MW: 20816.9 Da PI: 11.6371

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G07100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71.1	2.1e-22	1	101	239	353
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 +vv+eqe++hn++ + erf+eal+yy++ + +r s er+ vEr llg+ei+n+vac g errerhe rle aGF+ vpls++ OBART06G07100.1 1 MVVTEQEVSHNAAGLTERFVEALNYYAV-------GGARGSVERTRVERWLLGEEIKNIVACDGGERRERHE-------RLEGAGFGRVPLSYY 80 79**********************75.......345899**************************9.......999******** PP GRAS 333 aakqaklllrkvksdgyrvee 353 a qa+++ + + dg++ OBART06G07100.1 81 ALLQARRVAQGLGCDGFKRRR 101 **************98665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	7.2E-20	1	101	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	12.549	1	102	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MVVTEQEVSH NAAGLTERFV EALNYYAVGG ARGSVERTRV ERWLLGEEIK NIVACDGGER 60 RERHERLEGA GFGRVPLSYY ALLQARRVAQ GLGCDGFKRR RRPGIAAVEV AMAALPHTRA 120 PVSGHSHLVL ASLRRPPGPS PISRMRLGAA EKREARESGF LLRQPRRLPP RRSPPRGSLS 180 QFPSICIH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003458	1e-152	AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03.
GenBank	AP004687	1e-152	AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBank	AP014962	1e-152	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165765.1	6e-51	scarecrow-like protein 3
Swissprot	Q9LPR8	5e-31	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A0D3GE46	1e-130	A0A0D3GE46_9ORYZ; Uncharacterized protein
STRING	OBART06G07100.1	1e-131	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-22	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]