PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G07840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 208aa    MW: 22579.3 Da    PI: 4.6725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-171565155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +  +g+WvAeIr ps+   r r++lg+++t+e+Aa+a +aa   l+g
  OBART06G07840.1 15 KKYKGVRLRQ-WGKWVAEIRLPSS---RERVWLGSYDTPEKAARAFDAAFVFLRG 65
                     59*****998.**********965...4********************9887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.82E-221579No hitNo description
Gene3DG3DSA:3.30.730.101.2E-251679IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-181677IPR016177DNA-binding domain
SMARTSM003803.5E-261683IPR001471AP2/ERF domain
PROSITE profilePS5103220.9431677IPR001471AP2/ERF domain
PfamPF008474.2E-101660IPR001471AP2/ERF domain
PRINTSPR003673.8E-91728IPR001471AP2/ERF domain
PRINTSPR003673.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRMQTKNTAA PAPEKKYKGV RLRQWGKWVA EIRLPSSRER VWLGSYDTPE KAARAFDAAF  60
VFLRGAGAAD AAGLNFADSP LPVVARTRDL REVYAFAVSH ANRPPPVAGE TAATALAAMA  120
ALEHNEVREN IAPSSPLSAV QVAAPPAGSF DWSQLMANSP PLYSPIVIGI HAYDDLAVWP  180
TTQPVEEFSE EDNENEGATS DELWSFDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055450.0AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-147ethylene-responsive transcription factor ERF018-like
TrEMBLA0A0D3GED81e-148A0A0D3GED8_9ORYZ; Uncharacterized protein
STRINGOBART06G07840.11e-149(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-27ERF family protein