PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G07860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 342aa    MW: 38110.8 Da    PI: 4.6943
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G07860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.1e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  OBART06G07860.1  9 KRIENIPNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.903161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002659.78E-36278No hitNo description
SuperFamilySSF554552.09E-28284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-25323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRVKLQIKR IENIPNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG TIQNREYLIN MLTQLKCESD VTEDLTNTSS KAPVNSNIEE  120
LQQEIRRCQH QMQLTEEQLR MFEPDPARSA SMEDVEASEK FIAGILSRVE ERKRYLLCSM  180
GSFDVTASTS AMQHLYLPQQ HQHGDITSNG FGSDEVASWV SEGMPPTTSS VASIFAGTSD  240
SMMSFRDQAV YDTMRQDACV DHTVVPEMGM CHVDQQNQSD DWQAYTSDTM GPMLASSPLL  300
MPGIHDQQPP EEDMATAGCS QAPANNGNGL YAAEDIAPVK VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-16182183MEF2 CHIMERA
6bz1_B2e-16182183MEF2 CHIMERA
6bz1_C2e-16182183MEF2 CHIMERA
6bz1_D2e-16182183MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117760.0AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankFN6631300.0FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641968.20.0agamous-like MADS-box protein AGL66
TrEMBLA0A0D3GEE00.0A0A0D3GEE0_9ORYZ; Uncharacterized protein
STRINGOBART06G07860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-73AGAMOUS-like 66