PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G09510.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 169aa MW: 19117.7 Da PI: 11.4716

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G09510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	36	81	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd l ++ ++G+++W+++a+ m+ +R++ qc++rw+++l OBART06G09510.1 36 AWTPEEDAVLERLAMEHGSRHWRRVAAQMPRRRSPAQCRDRWRDHL 81 7******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.511	29	85	IPR017930	Myb domain
SMART	SM00717	2.0E-12	33	83	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.67E-18	34	136	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-18	36	91	IPR009057	Homeodomain-like
CDD	cd00167	4.03E-12	36	81	No hit	No description
Pfam	PF00249	2.3E-15	36	81	IPR001005	SANT/Myb domain
SMART	SM00717	0.59	86	142	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.784	89	140	IPR017877	Myb-like domain
Pfam	PF13921	3.8E-5	90	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-5	92	139	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDMELSSSSS STTVASSPAS SPPLGRCVLR FRLPPAWTPE EDAVLERLAM EHGSRHWRRV 60 AAQMPRRRSP AQCRDRWRDH LARDVFHRPF TAADDAELAR LCLRLDDDAG FAAGRRWKDV 120 SRAVYGRSSC AVKRRWRELR RSDAFLGALW RPRTTTTAPP ANAAITTTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3osf_A	6e-16	37	136	14	103	MYB21
3osf_D	6e-16	37	136	14	103	MYB21
3osg_A	6e-16	37	136	14	103	MYB21
3osg_D	6e-16	37	136	14	103	MYB21
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004651	0.0	AP004651.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06.
GenBank	AP005107	0.0	AP005107.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0431E05.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642261.1	1e-116	transcription factor MYB44
TrEMBL	A0A0D3GEX1	1e-115	A0A0D3GEX1_9ORYZ; Uncharacterized protein
STRING	OBART06G09510.1	1e-116	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8360	13	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-13	myb domain protein 73