PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G14980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 128aa    MW: 13769.7 Da    PI: 5.224
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G14980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.4e-092168285332
             GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                       Er+ll++e + vvacega+ +erhe +++W +++e+  +++v ls++
  OBART06G14980.1  21 EERVLLREETRGVVACEGAKLVERHEWARHWAAWMEADDMEQVGLSYS 68 
                      699******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.9E-62168IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDHVRNSALA ALESGVAAPR EERVLLREET RGVVACEGAK LVERHEWARH WAAWMEADDM  60
EQVGLSYSGA MHGGEEAATE LQVGGAVRPW LLILLAHEAA LRRLRVAAGA VAPPPRSVIG  120
EPASCSID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652810.0AK065281.1 Oryza sativa Japonica Group cDNA clone:J013002M01, full insert sequence.
GenBankAP0035200.0AP003520.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021H10.
GenBankAP0047340.0AP004734.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.12e-13scarecrow-like protein 3
RefseqXP_015619625.12e-13scarecrow-like protein 3
TrEMBLA0A0D3GGN97e-84A0A0D3GGN9_9ORYZ; Uncharacterized protein
STRINGOBART06G14980.11e-84(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3838322