PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G15310.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 208aa    MW: 23171.2 Da    PI: 10.282
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G15310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-091375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  OBART06G15310.1 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                     69*************776999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-81280IPR009057Homeodomain-like
SuperFamilySSF466892.44E-111278IPR009057Homeodomain-like
PfamPF000467.0E-71375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLVQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG  120
SLESGQVEFE AKSARDGAWY PCYFYPLQPL IALVSTPVML QPPLRQLPKK EHQASWYDVA  180
AFLSHRSFES GDPYEFAFLD LEPRKMNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685600.0AK068560.1 Oryza sativa Japonica Group cDNA clone:J013151L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.11e-100protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D3GGS91e-152A0A0D3GGS9_9ORYZ; Uncharacterized protein
STRINGOS06T0485100-031e-100(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.39e-33sequence-specific DNA binding transcription factors;sequence-specific DNA binding